Address
304 North Cardinal St.
Dorchester Center, MA 02124

Work Hours
Monday to Friday: 7AM - 7PM
Weekend: 10AM - 5PM

COURSE STRUCTURE

Unboxing CRISPR

for transdisciplinary learning

Structure

Course Structure

This pilot course was designed to allow you to adapt it to your context (country, education level, field of study) and so doesn’t have a rigid structure. Instead, we propose a series of materials and a general organization of exercises and topics interweaving theoretical and practical, scientific and artistic contents and approaches. 

However, you can easily adapt the proposed structure and contents to best fit your needs and circumstances.

General Structure (proposal)

What’s CRISP-R? (general explanation and debate)  | 2h | THEORY

Arts assignments or creative prompts to promote creativity | 2h | PRACTICAL

Exploring the art/science relationship and the concept of bio-art | 2h | THEORY

Basic concepts of molecular biology: DNA, protein, genes, RNA | 2h | THEORY

Introduction to gene edition – hands-on & DNA / RNA degradation | 2h | LABWORK

Cutting DNA & Gel Electrophoresis | 4h | LABWORK

Introduction to Gene Editing | 2h | THEORY

Introducing artworks exploring gene editing | 2h | THEORY

CRISP-R: how does it work | 2h | THEORY

Design & artworks exploring CRISPR | 2h | THEORY

Group Project: problem-solving with CRISPR | 4h | PRACTICAL
Design a project to address a problem in today’s world using CRISPR

In Silico CRISP-R (sgRNA) | 2h | THEORY

In Silico sgRNA design | 2h | LABWORK
Speculative imaginations by artists | 1h | THEORY

Playing with the genetic code | 3h | PRACTICAL
Design your sgRNA exploration (for the group project)

In vitro gene editing – sgRNA synthesis, RNA purification, Gel Electrophoresis, run, and analysis | 4h | THEORY + LABWORK

In vitro cleavage | 4h | THEORY + LABWORK

Problem-solving with CRISP-R | 1h | PRACTICAL
Methodology: What Lab work do I need to do?

CONSULTING WITH SCIENTISTS | 3h | PRACTICAL
Group work with researchers discussing the possibility of making the projects possible and on the limitations of science

Adjusting the projects & project development | 4h | PRACTICAL

Presentation of project prototypes | 3h | PRACTICAL

Reflection on the CRISP-R powers and limitations | 1h | PRACTICAL

Didactic exploration proposal 

This STEAM module for higher education is a multi-disciplinary approach focused on the subject matter of art & science, knowledge, and hands-on experiences, to address connections between technological and biological realms. It aims to equip the students with the ability to understand new concepts in different STEAM subjects, think (and experiment) critically and creatively, and act to develop and apply innovative ideas. In that sense, it also aims to integrate STEAM content with practical activities that promote the development of several skills ranging from creative thinking, laboratory skills, and learning molecular biology techniques and scientific and artistic thinking skills. Other skills are involved such as student collaboration and reflection in a learning-through-design project as well as communication and peer persuasion. Unboxing CRISPR can be structured to be taught over 13 steps. Below we describe the structure of those 13 steps by briefly outlining the topics and teaching and learning activities that can take place in each step. 

1st step – Students begin by exploring What’s CRISPR and how it can impact life, during a theoretical class. Afterward, in a practical class (2h), students will explore creative thinking techniques, using some creative prompts, to generate creative ideas on how to solve problems and change reality with CRISPR. The resulting ideas may then guide the group project to be developed during the course (step 6). 

2nd and 3rd steps – can be centered on scientific, theoretical, and practical knowledge. Thus, in the 2nd step, two hours of theoretical classes should be dedicated to Basic concepts of molecular biology: DNA, protein, genes, and RNA. The learning outcome is to understand the basic knowledge, especially around the foundations of genetics and CRISPR technology. This should be followed by, at least, two hours of practical laboratory work related to – Introduction to gene editinghands-on and DNA / RNA degradation

3rd step – should be dedicated to General precautions when handling RNA. Laboratory good practices to work with RNA need to be addressed so students learn about safety laboratory measures and how to avoid RNase contamination. Students should learn the fundamental skills of molecular biology techniques involving DNA, and RNA manipulation (4h), beginning with how to cut DNA and visualize DNA fragments using electrophoresis. 

4th step – in this step the classes should focus on merging science and arts. A theoretical introduction to gene editing (theoretical class), should be followed by a session with an art expert to introduce artworks exploring gene editing. Students should discuss the topic of how artists use art to explore this genome-editing technology. These artworks serve as triggers for discussion and reflection on Art & Science & Technology, as well as inspiration for the group projects.  

5th step – should be dedicated to understanding CRISPR both from a scientific point of view and its’ intersection with art and design. It consists of a theoretical exploration of CRISPR (2h of theoretical lecture), the presentation of design & artworks exploring CRISPR (2h), and debate and reflection. The idea is to inspire students to design a project for problem-solving with CRISPR (Design/Art project) (step 1). In that sense, a design thinking approach and problem-based learning can be adopted, for students to design, develop, and build their own projects.  

6th step – should be focused on collaborative work where students from diverse backgrounds design a project addressing the question – What problem would you like to try to solve with CRISPR? The answer to this question requires creative thinking to explore the relationships between CRISPR-Cas9 and Art and Design (Design / Art project) (step 2). This problem-exploration phase involves autonomous research, multidisciplinary reflection, and discussion, as well as the engagement and discussion with experts in diverse areas. 

7th step – should focus on Virtual Gene Editing, connecting theory with some practical examples, on theoretical-practical classes (2h) about In Silico CRISPR (sgRNA). This activity addresses the concepts behind genomes, mutations, and CRISPR/Cas edition. The session on sgRNA in silico design is an in silico lab work (2h) to design the guiding RNAs for the enzyme activity. Available online tools can be used to create single guide RNA and, therefore, target-specific genome regions with CRISPR, in distinct species. 

9th and 10th steps – these steps should involve the complete lab process of In vitro gene editing. It should start with a theoretical-practical class about an Overview of the CRISPR/Cas9 system (1h) aiming to explain what is the CRISPR-Cas9 system. During the lab work activity (3h) students will put their hands on the protocol by synthesizing the sgRNA (1h40) – RNA transcription using T7 RNA polymerase using DNA as a template; Purification of RNA (10 min); RNA synthesis confirmation in agarose gel (1h15). The Analysis of purified sgRNA by gel electrophoresis objective is to run the synthesized purified product in a gel to see if the purification worked. But it also allows a rough quantification of the sgRNA, based on the intensity of fluorescence of the bands.  

10th stepis also a laboratory work that focuses on In vitro cleavage of target DNA using CRISPR/Cas9. It involves a theoretical-practical session (1h) and a lab work session (3h). The objective of the hands-on activity is to perform a CRISPR/Cas9 reaction, run the DNA in vitro digestion in a gel, interpret the results and discuss. The product of the DNA digestion (from CRISPR/Cas9 reaction) will be visualized on an agarose gel, a standard lab procedure to separate DNA by size; shorter DNA fragments migrate through the gel more quickly than longer ones. The general learning outcome of these two steps (9 and 10): students should be able to apply hands-on activity to set up an in vitro CRISPR/Cas9 cut of a target DNA fragment. 

11th step – can be dedicated to a new phase of the project development, in which students are involved in designing and prototyping a solution for a problem. Through teamwork and collaboration, students focus on their projects on CRISPR (2h) trying to define what methods can they use and what lab work is necessary to make it a reality.  

This phase is dedicated to the scientific exploration of the creative realm. Students generate ideas, brainstorm, and discuss in this ideation phase. This can be followed by a hybrid mentoring session (2h) where students engage and discuss with researchers how to make their projects possible while gaining awareness of the limitations of the scientific process. In terms of Learning Outcomes, students will learn about scientific issues and will develop creative thinking.  

12th step – should be a practical session where students can work autonomously in adjusting their projects, and prepare the materials for the projects’ presentations.  

13th step – should be dedicated to the presentation of projects and to a discussion on the CRISPR powers and limitations from a STEAM perspective, involving students in a multidisciplinary reflection and discussion.